CSDeconv

CSDeconv maps transcription factor binding sites from ChIP-seq data to high resolution using a blind deconvolution approach.

Requirements

• MATLAB
• Optimization Toolbox
• Statistics Toolbox

Download

• CSDeconv 1.03 (zip 14 KB)
• DosR 2h ChIP data (zip 98 MB)
• DosR 2h control data (zip 101 MB)
• GABP data

Publication

• D. S. Lun, A. Sherrid, B. Weiner, D. R. Sherman, and J. E. Galagan. A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-Seq data. Genome Biol., 10(12):R142, December 2009.